Package index • searchAnalyzeR

All functions

BenchmarkValidator: Benchmark Validation System

PRISMAReporter: PRISMA-Compliant Report Generator

PubMedConnector: PubMed Database Connector

ReproducibilityManager: Search Reproducibility Manager

SearchAnalyzer: Search Strategy Analytics Engine

analysis_env(): Create a Temporary Analysis Environment

auto_detect_columns(): Auto-detect Column Mappings

bootstrap_compare(): Bootstrap Comparison of Search Strategies

cache_manage(): Manage Search Results Cache

calc_ci(): Calculate Confidence Intervals

calc_cosine(): Calculate Cosine Similarity

calc_coverage(): Calculate Coverage Metrics Across Databases

calc_efficiency(): Calculate Search Efficiency Metrics

calc_jaccard(): Calculate Jaccard Similarity

calc_precision_recall(): Calculate Precision and Recall Metrics

calc_sample_size(): Power Analysis for Search Strategy Evaluation

calc_search_stats(): Calculate Search Result Statistics

calc_strategy_comparison(): Calculate Strategy Comparison Metrics

calc_temporal_coverage(): Calculate Temporal Coverage Metrics

calc_tes(): Calculate Term Effectiveness Score

calc_text_sim(): Calculate Text Similarity

check_deps(): Utility Functions for searchAnalyzeR Package

chunk_process(): Process Large Dataset in Chunks

clean_col_names(): Clean Column Names

clean_text(): Clean Text Fields

compare_strategies(): Benchmark Testing Framework for Search Strategies

compare_terms(): Compare Terms Across Strategies

complete_search_workflow(): Complete Search and Analysis Workflow

create_analysis_template(): Create Analysis Template Script

create_data_dictionary(): Create Data Dictionary

create_data_package(): Create Data Package for Sharing

create_package_manifest(): Create Package Manifest

create_package_readme(): Create Package README

create_prisma(): Create PRISMA Flow Diagram with Proper Spacing and Text Enclosure

create_progress_bar(): Create Progress Bar for Long Operations

create_strategy(): Create Default Search Strategy Template

create_summary(): Create Summary Statistics Table

cv_strategy(): Cross-Validation Framework for Search Strategies

detect_doi_dupes(): Detect DOI-based Duplicates

detect_dupes(): Detect and Remove Duplicate Records

detect_exact_dupes(): Detect Exact Duplicates

detect_fuzzy_dupes(): Detect Fuzzy Duplicates

export_metrics(): Export Analysis Metrics

export_metrics_csv(): Export Metrics to CSV

export_metrics_json(): Export Metrics to JSON

export_metrics_xlsx(): Export Metrics to Excel

export_results(): Export Utilities for Search Analysis Results

export_to_bibtex(): Export to BibTeX Format

export_to_csv(): Export to CSV Format

export_to_endnote(): Export to EndNote Format

export_to_ris(): Export to RIS Format

export_to_xlsx(): Export to Excel Format with Multiple Sheets

export_validation(): Export Validation Results

export_validation_csv(): Export Validation Results to CSV

export_validation_json(): Export Validation Results to JSON

export_validation_xlsx(): Export Validation Results to Excel

extract_screening(): Extract Screening Data Structure

find_top_terms(): Find Top Performing Terms

format_numbers(): Format Numbers for Display

gen_repro_seed(): Generate Reproducible Random Seed

get_pkg_versions(): Extract Package Version Information

is_empty(): Check if Object is Empty

mem_cleanup(): Clean up Search Analysis Objects to Free Memory

mem_monitor(): Monitor Memory Usage During Function Execution

mem_usage(): Get Current Memory Usage

merge_results(): Merge Search Results from Multiple Sources

meta_analyze(): Meta-Analysis of Benchmark Results

opt_df(): Memory-Efficient Data Frame

plot_db_performance(): Create Database Performance Comparison

plot_keyword_eff(): Create Keyword Effectiveness Analysis Plot

plot_overview(): Visualization Functions for Search Strategy Analysis

plot_pr_curve(): Create Precision-Recall Curve

plot_sensitivity(): Create Sensitivity Analysis Heatmap

plot_temporal(): Create Temporal Coverage Plot

plot_term_effectiveness(): Plot Term Effectiveness Results

print(<term_comparison>): Print Method for Term Comparison

print(<term_effectiveness>): Print Method for term_effectiveness Objects

rename_columns(): Rename Columns Based on Mapping

run_benchmarks(): Benchmark Suite Execution

safe_divide(): Safe Division Function

safe_list_to_df(): Convert List to Data Frame Safely

search_multiple_databases(): Search Multiple Databases

search_pubmed(): Search PubMed and Retrieve Articles

simulate_search_execution(): Simulate Search Strategy Execution

standardize_date(): Standardize Date Formats

std_cochrane_results(): Standardize Cochrane Results

std_embase_results(): Standardize Embase Results

std_generic_results(): Standardize Generic Results

std_pubmed_results(): Standardize PubMed Results

std_scopus_results(): Standardize Scopus Results

std_search_results(): Standardize Search Results Format

std_wos_results(): Standardize Web of Science Results

stream_file(): Stream Process Large Files

term_effectiveness(): Analyze Term Effectiveness in Search Results

validate_date_range(): Validate Date Range

validate_strategy(): Validate Search Strategy Object